SNP Report
Basic Infomation
| Name | rs7199847 dbSNP |
|---|---|
| Location | chr:16,11447272 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12149020 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12926849 | 0.86[AMR][1000 genomes] |
| rs12927152 | 0.86[AMR][1000 genomes] |
| rs149310 | 1.00[CHD][hapmap] |
| rs1532303 | 0.85[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs17233387 | 1.00[CHD][hapmap] |
| rs17605444 | 1.00[CHD][hapmap] |
| rs193778 | 1.00[CHD][hapmap] |
| rs193779 | 1.00[CHD][hapmap] |
| rs28448519 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6498181 | 1.00[CHD][hapmap] |
| rs6498183 | 1.00[CHD][hapmap] |
| rs6498185 | 1.00[CHD][hapmap] |
| rs7190050 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7191093 | 1.00[CHD][hapmap] |
| rs7195536 | 1.00[CHD][hapmap] |
| rs7198849 | 1.00[CHD][hapmap] |
| rs7204628 | 1.00[CHD][hapmap] |
| rs9928526 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9935384 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000262703 | Proximal transcriptional regulation |
| RMI2 | Distal transcriptional regulation |
| ENSG00000238774 | Distal transcriptional regulation |
| ENSG00000262703 | Distal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014