SNP Report
Basic Infomation
| Name | rs7191093 dbSNP |
|---|---|
| Location | chr:16,11442279 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 62)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074958 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11545336 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12934968 | 0.86[EUR][1000 genomes] |
| rs13330151 | 0.96[CEU][hapmap];0.85[AMR][1000 genomes] |
| rs149310 | 1.00[CHD][hapmap] |
| rs1532303 | 1.00[CHD][hapmap] |
| rs17233387 | 0.95[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17605444 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs193778 | 1.00[CHD][hapmap] |
| rs193779 | 1.00[CHD][hapmap] |
| rs28464784 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs28627609 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4315353 | 0.86[EUR][1000 genomes] |
| rs4356497 | 0.88[EUR][1000 genomes] |
| rs4390613 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs441021 | 0.81[EUR][1000 genomes] |
| rs4563054 | 0.87[EUR][1000 genomes] |
| rs4780357 | 0.96[CEU][hapmap] |
| rs4780358 | 1.00[CEU][hapmap] |
| rs4780363 | 0.85[EUR][1000 genomes] |
| rs4781055 | 1.00[CEU][hapmap] |
| rs4781069 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs56136462 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs57579443 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6498181 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6498183 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6498185 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.80[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs66555362 | 0.83[EUR][1000 genomes] |
| rs7186455 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7187870 | 0.93[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7189044 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7193278 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7195536 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7198849 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs7199821 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7199847 | 1.00[CHD][hapmap] |
| rs7200667 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7202024 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7202814 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7204628 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7206017 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7206749 | 1.00[CEU][hapmap] |
| rs72773825 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773827 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773829 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72773830 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773831 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773832 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773833 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773834 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7626 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8043692 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs8048768 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs8056282 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs9302459 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9921338 | 0.90[MEX][hapmap];0.86[EUR][1000 genomes] |
| rs9926136 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9935384 | 1.00[CHD][hapmap] |
| rs9935665 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9936093 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9936328 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9937269 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238774 | Proximal transcriptional regulation |
| ENSG00000263080 | Proximal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| ENSG00000262636 | Distal transcriptional regulation |
| ENSG00000262703 | RNA binding protein mediated regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014