SNP Report
Basic Infomation
| Name | rs193779 dbSNP |
|---|---|
| Location | chr:16,11350965 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11640138 | 0.85[YRI][hapmap] |
| rs149310 | 0.96[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1532303 | 1.00[CHD][hapmap] |
| rs17233387 | 1.00[CHD][hapmap] |
| rs17605444 | 1.00[CHD][hapmap] |
| rs181582 | 0.96[CEU][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs193778 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs55870745 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs56069754 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs56350515 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6498181 | 1.00[CHD][hapmap] |
| rs6498183 | 1.00[CHD][hapmap] |
| rs6498185 | 1.00[CHD][hapmap] |
| rs7191093 | 1.00[CHD][hapmap] |
| rs7191538 | 0.85[YRI][hapmap] |
| rs7195536 | 1.00[CHD][hapmap] |
| rs7198849 | 1.00[ASW][hapmap];1.00[CHD][hapmap] |
| rs7199847 | 1.00[CHD][hapmap] |
| rs7204628 | 1.00[CHD][hapmap] |
| rs72771866 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs80945 | 0.92[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs9935384 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SOCS1 | Proximal transcriptional regulation |
| CLEC16A | Distal transcriptional regulation |
| ENSG00000262020 | Distal transcriptional regulation |
| ENSG00000263080 | Distal transcriptional regulation |
| RMI2 | Distal transcriptional regulation |
| ENSG00000238774 | Distal transcriptional regulation |
| PRM3 | Distal transcriptional regulation |
| ENSG00000212228 | Distal transcriptional regulation |
| TNP2 | Distal transcriptional regulation |
| ENSG00000188897 | Distal transcriptional regulation |
| ENSG00000263033 | Distal transcriptional regulation |
| ENSG00000262703 | Distal transcriptional regulation |
| ENSG00000199668 | Distal transcriptional regulation |
| PRM2 | Distal transcriptional regulation |
| ARPP19 | Distal transcriptional regulation |
| PRM1 | Distal transcriptional regulation |
| ENSG00000263179 | Distal transcriptional regulation |
| ENSG00000238409 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014