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rVarBase
SNP Report
Basic Infomation
Name
rs80945  
dbSNP
Location
chr:16,11343120
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11640788
1.00[CHB][hapmap]
rs149310
0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs181582
0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs193778
0.92[CEU][hapmap];0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs193779
0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs55870745
0.91[EUR][1000 genomes]
rs56069754
0.92[EUR][1000 genomes]
rs56350515
0.91[EUR][1000 genomes]
rs72771866
0.90[EUR][1000 genomes]
rs9921338
1.00[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
RMI2
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)