SNP Report
Basic Infomation
| Name | rs9935384 dbSNP |
|---|---|
| Location | chr:16,11407178 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs149310 | 1.00[CHD][hapmap] |
| rs1532303 | 0.85[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap] |
| rs17233387 | 1.00[CHD][hapmap] |
| rs17605444 | 1.00[CHD][hapmap] |
| rs193778 | 1.00[CHD][hapmap] |
| rs193779 | 1.00[CHD][hapmap] |
| rs6498181 | 1.00[CHD][hapmap] |
| rs6498183 | 1.00[CHD][hapmap] |
| rs6498185 | 1.00[CHD][hapmap] |
| rs7191093 | 1.00[CHD][hapmap] |
| rs7195536 | 1.00[CHD][hapmap] |
| rs7198849 | 1.00[CHD][hapmap] |
| rs7199847 | 1.00[CHD][hapmap] |
| rs7204628 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RMI2 | Proximal transcriptional regulation |
| ENSG00000199668 | Proximal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| PRM2 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014