SNP Report
Basic Infomation
| Name | rs4780358 dbSNP |
|---|---|
| Location | chr:16,11374212 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074958 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12934968 | 0.86[EUR][1000 genomes] |
| rs13330151 | 0.96[CEU][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17233387 | 0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17605444 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4315353 | 0.86[EUR][1000 genomes] |
| rs4356497 | 0.88[EUR][1000 genomes] |
| rs4390613 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs441021 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4780356 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4780357 | 0.96[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4780363 | 0.85[EUR][1000 genomes] |
| rs4781055 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4781069 | 0.82[EUR][1000 genomes] |
| rs55707838 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56010295 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs56136462 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6498181 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6498183 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs6498185 | 1.00[CEU][hapmap] |
| rs66555362 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7186455 | 0.84[EUR][1000 genomes] |
| rs7187870 | 1.00[CEU][hapmap] |
| rs7191093 | 1.00[CEU][hapmap] |
| rs7193645 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7195536 | 1.00[CEU][hapmap] |
| rs7198849 | 1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7199821 | 0.85[EUR][1000 genomes] |
| rs7202814 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7204628 | 1.00[CEU][hapmap] |
| rs7206749 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72771877 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72773825 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773827 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773829 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72773830 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773831 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773832 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773833 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72773834 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs8043692 | 0.84[EUR][1000 genomes] |
| rs8048768 | 1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs8056282 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs8060767 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9302459 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9921338 | 0.86[EUR][1000 genomes] |
| rs9937269 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRM2 | Proximal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014