SNP Report
Basic Infomation
| Name | rs28448519 dbSNP |
|---|---|
| Location | chr:16,11439983 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11640467 | 1.00[ASN][1000 genomes] |
| rs11640800 | 1.00[ASN][1000 genomes] |
| rs12149020 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12926849 | 0.84[AMR][1000 genomes] |
| rs12927152 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs149311 | 1.00[ASN][1000 genomes] |
| rs152308 | 1.00[ASN][1000 genomes] |
| rs1532303 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1640884 | 1.00[ASN][1000 genomes] |
| rs1640916 | 1.00[ASN][1000 genomes] |
| rs1640920 | 1.00[ASN][1000 genomes] |
| rs1646069 | 1.00[ASN][1000 genomes] |
| rs173593 | 1.00[ASN][1000 genomes] |
| rs193772 | 1.00[ASN][1000 genomes] |
| rs2867945 | 1.00[ASN][1000 genomes] |
| rs35460970 | 1.00[ASN][1000 genomes] |
| rs37940 | 1.00[ASN][1000 genomes] |
| rs393161 | 1.00[ASN][1000 genomes] |
| rs431918 | 1.00[ASN][1000 genomes] |
| rs56944133 | 1.00[ASN][1000 genomes] |
| rs57349119 | 1.00[ASN][1000 genomes] |
| rs57831720 | 1.00[ASN][1000 genomes] |
| rs7188518 | 1.00[ASN][1000 genomes] |
| rs7190050 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7195820 | 1.00[ASN][1000 genomes] |
| rs7199847 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7200855 | 1.00[ASN][1000 genomes] |
| rs72771865 | 1.00[ASN][1000 genomes] |
| rs72771868 | 1.00[ASN][1000 genomes] |
| rs72773814 | 1.00[ASN][1000 genomes] |
| rs72773847 | 1.00[ASN][1000 genomes] |
| rs72773848 | 1.00[ASN][1000 genomes] |
| rs72773852 | 1.00[ASN][1000 genomes] |
| rs72773859 | 1.00[ASN][1000 genomes] |
| rs72773860 | 1.00[ASN][1000 genomes] |
| rs9928526 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238774 | Proximal transcriptional regulation |
| ENSG00000263080 | Proximal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| GSPT1 | Distal transcriptional regulation |
| ENSG00000266163 | Distal transcriptional regulation |
| TNP2 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ENSG00000175643 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014