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rVarBase
SNP Report
Basic Infomation
Name
rs12149020  
dbSNP
Location
chr:16,11441748
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12926849
0.82[AMR][1000 genomes]
rs12927152
0.82[AMR][1000 genomes]
rs1808438
0.82[ASN][1000 genomes]
rs28448519
0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4275869
0.81[ASN][1000 genomes]
rs4780365
0.86[ASN][1000 genomes]
rs4781074
0.83[ASN][1000 genomes]
rs7190050
0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7199847
0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9928526
0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000238774
Proximal transcriptional regulation
ENSG00000263080
Proximal transcriptional regulation
SOCS1
Distal transcriptional regulation
ENSG00000262636
Distal transcriptional regulation
RMI2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)