SNP Report

Basic Infomation

Name	rs6661212 dbSNP
Location	chr:1,154946696
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10908449	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264293	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1131397	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587981	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11590058	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12075984	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076073	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096640	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16836580	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16836586	0.82[ASW][hapmap];0.85[YRI][hapmap]
rs2089247	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089248	1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878517	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28851228	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766921	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59519769	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683093	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695407	0.84[ASW][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696397	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525164	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525580	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528060	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528548	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7535144	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8191979	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SHC1	Proximal transcriptional regulation
CKS1B	Proximal transcriptional regulation
MIR4258	Proximal transcriptional regulation
RNU5A-1	Distal transcriptional regulation
NHLRC2	Distal transcriptional regulation
ENSG00000258017	Distal transcriptional regulation
TUBA1B	Distal transcriptional regulation
ENSG00000257815	Distal transcriptional regulation
CNOT2	Distal transcriptional regulation
NFYB	Distal transcriptional regulation
GABARAPL1	Distal transcriptional regulation
ALG5	Distal transcriptional regulation
EGLN3	Distal transcriptional regulation
PPM1A	Distal transcriptional regulation
ENSG00000260806	Distal transcriptional regulation
PAPOLA	Distal transcriptional regulation
RNU5B-1	Distal transcriptional regulation
FBRS	Distal transcriptional regulation
ENSG00000267321	Distal transcriptional regulation
ENSG00000261575	Distal transcriptional regulation
PROCA1	Distal transcriptional regulation
NDEL1	Distal transcriptional regulation
SKA2	Distal transcriptional regulation
UBE2Z	Distal transcriptional regulation
ILVBL	Distal transcriptional regulation
GTPBP3	Distal transcriptional regulation
ENSG00000226953	Distal transcriptional regulation
ENSG00000222724	Distal transcriptional regulation
CFLAR	Distal transcriptional regulation
FAM83D	Distal transcriptional regulation
LPP	Distal transcriptional regulation
EEF1A1	Distal transcriptional regulation
HIST1H4B	Distal transcriptional regulation
HIST1H3A	Distal transcriptional regulation
SLC39A7	Distal transcriptional regulation
RXRB	Distal transcriptional regulation
CD164	Distal transcriptional regulation
KLHL7-AS1	Distal transcriptional regulation
KLHL7	Distal transcriptional regulation
BCL7B	Distal transcriptional regulation
CLDN4	Distal transcriptional regulation
COPS5	Distal transcriptional regulation
CSPP1	Distal transcriptional regulation
ATAD3B	Distal transcriptional regulation
SNHG12	Distal transcriptional regulation
ENSG00000270103	Distal transcriptional regulation
ENSG00000201699	Distal transcriptional regulation
ADAM15	Distal transcriptional regulation
PBXIP1	Distal transcriptional regulation
FDPS	Distal transcriptional regulation
EFNA4	Distal transcriptional regulation
ENSG00000251246	Distal transcriptional regulation
EFNA1	Distal transcriptional regulation
ENSG00000232093	Distal transcriptional regulation
MUC1	Distal transcriptional regulation
FUCA2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)