SNP Report
Basic Infomation
| Name | rs16836586 dbSNP |
|---|---|
| Location | chr:1,154947905 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11465203 | 1.00[AMR][1000 genomes] |
| rs16836580 | 1.00[ASW][hapmap];0.85[YRI][hapmap] |
| rs2070679 | 1.00[AMR][1000 genomes] |
| rs2089247 | 0.82[ASW][hapmap];0.85[YRI][hapmap] |
| rs2878517 | 0.82[ASW][hapmap];0.85[YRI][hapmap] |
| rs6661212 | 0.82[ASW][hapmap];0.85[YRI][hapmap] |
| rs6671228 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6683147 | 1.00[AMR][1000 genomes] |
| rs6683706 | 1.00[AMR][1000 genomes] |
| rs6695407 | 1.00[YRI][hapmap] |
| rs7528548 | 0.82[ASW][hapmap];0.85[YRI][hapmap] |
| rs7549705 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7556374 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SHC1 | Proximal transcriptional regulation |
| CKS1B | Proximal transcriptional regulation |
| MIR4258 | Proximal transcriptional regulation |
| RRP8 | Distal transcriptional regulation |
| ILK | Distal transcriptional regulation |
| PARN | Distal transcriptional regulation |
| BFAR | Distal transcriptional regulation |
| ENSG00000200997 | Distal transcriptional regulation |
| SDF2 | Distal transcriptional regulation |
| SUPT6H | Distal transcriptional regulation |
| RRM2 | Distal transcriptional regulation |
| ENSG00000270103 | Distal transcriptional regulation |
| RNU5E-4P | Distal transcriptional regulation |
| ADAR | Distal transcriptional regulation |
| ADAM15 | Distal transcriptional regulation |
| EFNA4 | Distal transcriptional regulation |
| ENSG00000251246 | Distal transcriptional regulation |
| ENSG00000232093 | Distal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| SCAMP3 | Distal transcriptional regulation |
| CKS1B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014