SNP Report
Basic Infomation
| Name | rs2070679 dbSNP |
|---|---|
| Location | chr:1,155210641 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11465203 | 1.00[AMR][1000 genomes] |
| rs16836586 | 1.00[AMR][1000 genomes] |
| rs59650797 | 1.00[AMR][1000 genomes] |
| rs6672663 | 1.00[AMR][1000 genomes] |
| rs6683147 | 1.00[AMR][1000 genomes] |
| rs6683706 | 1.00[AMR][1000 genomes] |
| rs6690002 | 1.00[AMR][1000 genomes] |
| rs7527209 | 1.00[AMR][1000 genomes] |
| rs7529556 | 1.00[AMR][1000 genomes] |
| rs7531890 | 1.00[AMR][1000 genomes] |
| rs7536194 | 1.00[AMR][1000 genomes] |
| rs7554397 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GBA | Proximal transcriptional regulation |
| ENSG00000216109 | Proximal transcriptional regulation |
| MUC1 | Distal transcriptional regulation |
| MIR92B | Distal transcriptional regulation |
| THBS3 | Distal transcriptional regulation |
| ENSG00000231064 | Distal transcriptional regulation |
| MTX1 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| GBA | Distal transcriptional regulation |
| FAM189B | Distal transcriptional regulation |
| ENSG00000236263 | Distal transcriptional regulation |
| RUSC1 | Distal transcriptional regulation |
| RUSC1-AS1 | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| SCAMP3 | Distal transcriptional regulation |
| MTX1P1 | Distal transcriptional regulation |
| GBA | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014