SNP Report

Basic Infomation

Name	rs16836580 dbSNP
Location	chr:1,154945047
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10908449	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264293	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1131397	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585145	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587981	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11590058	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12075984	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076073	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096640	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16836586	1.00[ASW][hapmap];0.85[YRI][hapmap]
rs2089247	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089248	1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878517	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28851228	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766921	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59519769	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661212	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683093	1.00[ASN][1000 genomes]
rs6695407	1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696397	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525164	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525580	1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528060	1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528548	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7535144	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8191979	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SHC1	Proximal transcriptional regulation
CKS1B	Proximal transcriptional regulation
MIR4258	Proximal transcriptional regulation
RAB8B	Distal transcriptional regulation
RNU5A-1	Distal transcriptional regulation
ADAR	Distal transcriptional regulation
ADAM15	Distal transcriptional regulation
MUC1	Distal transcriptional regulation
EFNA4	Distal transcriptional regulation
ENSG00000251246	Distal transcriptional regulation
UBE2Q1	Distal transcriptional regulation
EFNA1	Distal transcriptional regulation
ENSG00000232093	Distal transcriptional regulation
SLC50A1	Distal transcriptional regulation
ENSG00000250784	Distal transcriptional regulation
EFNA3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)