SNP Report
Basic Infomation
| Name | rs28851228 dbSNP |
|---|---|
| Location | chr:1,154963946 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908449 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264293 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1131397 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11585145 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11587981 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11590058 | 1.00[EUR][1000 genomes] |
| rs12075984 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12076073 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12096640 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16836580 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2089247 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2089248 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2878517 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3766921 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59519769 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6661212 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6683093 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6695407 | 1.00[ASN][1000 genomes] |
| rs6696397 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7525164 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7525580 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7528060 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7528548 | 1.00[ASN][1000 genomes] |
| rs7535144 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8191979 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FLAD1 | Proximal transcriptional regulation |
| LENEP | Proximal transcriptional regulation |
| FLAD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014