SNP Report

Basic Infomation

Name	rs8191979 dbSNP
Location	chr:1,154938662
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10908449	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264293	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1131397	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587981	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11590058	0.95[EUR][1000 genomes]
rs12075984	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076073	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096640	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16836580	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089247	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089248	1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878517	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28851228	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766921	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59519769	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661212	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683093	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695407	1.00[CHD][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696397	0.80[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525164	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525580	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528060	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528548	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs7535144	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SHC1	Proximal transcriptional regulation
PYGO2	Proximal transcriptional regulation
ADAM15	Distal transcriptional regulation
EFNA3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)