SNP Report
Basic Infomation
| Name | rs6141829 dbSNP |
|---|---|
| Location | chr:20,31439209 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2268320 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2268321 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2300419 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2424925 | 0.82[YRI][hapmap] |
| rs2424930 | 1.00[ASW][hapmap];0.87[LWK][hapmap];0.90[YRI][hapmap] |
| rs242532 | 0.94[ASN][1000 genomes] |
| rs3746386 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4911268 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6057638 | 0.93[GIH][hapmap] |
| rs6119287 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6119294 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6119954 | 0.97[GIH][hapmap];0.90[JPT][hapmap] |
| rs6119968 | 0.91[YRI][hapmap] |
| rs6119969 | 0.82[YRI][hapmap] |
| rs6120005 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6141803 | 0.93[GIH][hapmap] |
| rs6141813 | 0.97[GIH][hapmap];0.95[JPT][hapmap] |
| rs6141824 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6141825 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6141832 | 0.99[ASN][1000 genomes] |
| rs6141834 | 0.82[CEU][hapmap];0.81[CHB][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap] |
| rs6141846 | 0.94[LWK][hapmap] |
| rs853858 | 0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs853862 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000260536 | Distal transcriptional regulation |
| ENSG00000260257 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014