SNP Report
Basic Infomation
| Name | rs6057638 dbSNP |
|---|---|
| Location | chr:20,31339332 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11167176 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11699834 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13038397 | 0.96[EUR][1000 genomes] |
| rs34255848 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6119294 | 0.93[GIH][hapmap] |
| rs6119945 | 0.83[EUR][1000 genomes] |
| rs6119947 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6119954 | 0.89[CEU][hapmap];0.95[GIH][hapmap];0.87[EUR][1000 genomes] |
| rs6141803 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6141807 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6141813 | 0.89[CEU][hapmap];0.95[GIH][hapmap];0.85[EUR][1000 genomes] |
| rs6141829 | 0.93[GIH][hapmap] |
| rs6141834 | 0.83[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COMMD7 | Distal transcriptional regulation |
| DNMT3B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014