SNP Report
Basic Infomation
| Name | rs6119954 dbSNP |
|---|---|
| Location | chr:20,31364166 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485500 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs11167176 | 0.87[EUR][1000 genomes] |
| rs11699834 | 0.90[EUR][1000 genomes] |
| rs13038397 | 0.83[EUR][1000 genomes] |
| rs2424913 | 0.92[YRI][hapmap] |
| rs34255848 | 0.86[EUR][1000 genomes] |
| rs3746386 | 0.90[JPT][hapmap] |
| rs57953392 | 0.93[AFR][1000 genomes] |
| rs6057638 | 0.89[CEU][hapmap];0.95[GIH][hapmap];0.87[EUR][1000 genomes] |
| rs6119284 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs6119294 | 0.97[GIH][hapmap];0.90[JPT][hapmap] |
| rs6119947 | 0.89[EUR][1000 genomes] |
| rs6119951 | 0.84[ASW][hapmap] |
| rs6119958 | 0.95[AFR][1000 genomes] |
| rs6119962 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs6120005 | 0.90[JPT][hapmap] |
| rs6141803 | 0.89[CEU][hapmap];0.95[GIH][hapmap];0.87[EUR][1000 genomes] |
| rs6141807 | 0.88[EUR][1000 genomes] |
| rs6141813 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6141829 | 0.97[GIH][hapmap];0.90[JPT][hapmap] |
| rs6141834 | 0.88[GIH][hapmap];0.83[MEX][hapmap] |
| rs73258152 | 0.95[AFR][1000 genomes] |
| rs853858 | 0.91[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNMT3B | Proximal transcriptional regulation |
| ENSG00000228156 | Distal transcriptional regulation |
| DNMT3B | Distal transcriptional regulation |
| COMMD7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014