SNP Report
Basic Infomation
| Name | rs6141834 dbSNP |
|---|---|
| Location | chr:20,31451351 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs3746386 | 0.82[CEU][hapmap] |
| rs6057638 | 0.83[GIH][hapmap] |
| rs6119294 | 0.82[CEU][hapmap];0.90[GIH][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap] |
| rs6119954 | 0.88[GIH][hapmap];0.83[MEX][hapmap] |
| rs6120005 | 0.82[CEU][hapmap] |
| rs6141803 | 0.83[GIH][hapmap] |
| rs6141813 | 0.88[GIH][hapmap];0.83[MEX][hapmap] |
| rs6141829 | 0.82[CEU][hapmap];0.81[CHB][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap] |
| rs6141833 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAPRE1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014