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rVarBase
SNP Report
Basic Infomation
Name
rs6119947  
dbSNP
Location
chr:20,31332791
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11167176
0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11699834
0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13038397
0.93[EUR][1000 genomes]
rs34255848
0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6057638
0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6119954
0.89[EUR][1000 genomes]
rs6141803
0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6141807
0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6141813
0.87[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
COMMD7
Proximal transcriptional regulation
DNMT3B
Distal transcriptional regulation
MAPRE1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)