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rVarBase
SNP Report
Basic Infomation
Name
rs242532  
dbSNP
Location
chr:20,31445466
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2268320
0.91[ASN][1000 genomes]
rs2268321
0.91[ASN][1000 genomes]
rs2300419
0.91[ASN][1000 genomes]
rs3746386
0.92[ASN][1000 genomes]
rs4911268
0.91[ASN][1000 genomes]
rs6119287
0.89[ASN][1000 genomes]
rs6119294
0.94[ASN][1000 genomes]
rs6120005
0.92[ASN][1000 genomes]
rs6141824
0.90[ASN][1000 genomes]
rs6141825
0.91[ASN][1000 genomes]
rs6141829
0.94[ASN][1000 genomes]
rs6141832
0.92[ASN][1000 genomes]
rs853858
0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs853862
0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
EFCAB8
Proximal transcriptional regulation
ENSG00000260536
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)