SNP Report
Basic Infomation
| Name | rs2424930 dbSNP |
|---|---|
| Location | chr:20,31391898 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2424912 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2424916 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2424917 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2424923 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2424924 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2424925 | 0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2424926 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2424927 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2424931 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6057606 | 1.00[TSI][hapmap] |
| rs6119287 | 0.86[AFR][1000 genomes] |
| rs6119967 | 1.00[MEX][hapmap] |
| rs6119968 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119969 | 0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6120005 | 0.90[YRI][hapmap] |
| rs6141824 | 0.88[AFR][1000 genomes] |
| rs6141825 | 0.83[AFR][1000 genomes] |
| rs6141829 | 1.00[ASW][hapmap];0.87[LWK][hapmap];0.90[YRI][hapmap] |
| rs6141846 | 0.82[LWK][hapmap] |
| rs8122731 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAPRE1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014