SNP Report
Basic Infomation
| Name | rs6011153 dbSNP |
|---|---|
| Location | chr:20,62450502 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1887407 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2180631 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4578911 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60022917 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6010657 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6010662 | 0.94[EUR][1000 genomes] |
| rs6010663 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6010665 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6010674 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6011135 | 0.94[EUR][1000 genomes] |
| rs6011174 | 1.00[ASN][1000 genomes] |
| rs6011175 | 0.83[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6011176 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6011178 | 0.83[EUR][1000 genomes] |
| rs6011179 | 0.83[EUR][1000 genomes] |
| rs6011180 | 0.83[EUR][1000 genomes] |
| rs61653788 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7270958 | 1.00[ASN][1000 genomes] |
| rs73323366 | 0.94[EUR][1000 genomes] |
| rs73323382 | 0.94[EUR][1000 genomes] |
| rs73325349 | 0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73325382 | 0.83[EUR][1000 genomes] |
| rs7344617 | 0.87[EUR][1000 genomes] |
| rs8115050 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ABHD16B | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014