SNP Report
Basic Infomation
| Name | rs2180631 dbSNP |
|---|---|
| Location | chr:20,62426393 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11905798 | 1.00[CEU][hapmap] |
| rs11905801 | 1.00[CEU][hapmap];0.85[TSI][hapmap] |
| rs1887407 | 0.82[CEU][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2281929 | 0.81[YRI][hapmap] |
| rs4538263 | 0.85[YRI][hapmap] |
| rs4578911 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4809341 | 1.00[ASN][1000 genomes] |
| rs4809344 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs4809358 | 0.81[ASW][hapmap] |
| rs6010650 | 1.00[ASN][1000 genomes] |
| rs6010652 | 0.90[MKK][hapmap];0.86[YRI][hapmap] |
| rs6010655 | 0.81[ASW][hapmap];0.85[YRI][hapmap] |
| rs6010657 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6010662 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6010663 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6010665 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6010669 | 0.81[ASW][hapmap] |
| rs6011109 | 1.00[ASN][1000 genomes] |
| rs6011135 | 0.87[EUR][1000 genomes] |
| rs6011153 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6011178 | 0.82[CEU][hapmap] |
| rs6011180 | 1.00[CEU][hapmap] |
| rs6062314 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs6089996 | 1.00[ASN][1000 genomes] |
| rs61653788 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs73323366 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73323382 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73325349 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7344617 | 0.82[CEU][hapmap];0.81[YRI][hapmap] |
| rs751861 | 0.81[ASW][hapmap] |
| rs755017 | 0.82[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZBTB46 | Proximal transcriptional regulation |
| ZBTB46 | Distal transcriptional regulation |
| ENSG00000269223 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014