SNP Report
Basic Infomation
| Name | rs6010657 dbSNP |
|---|---|
| Location | chr:20,62430685 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11905798 | 1.00[CHB][hapmap] |
| rs1887407 | 0.89[EUR][1000 genomes] |
| rs2180631 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4578911 | 0.89[EUR][1000 genomes] |
| rs57620666 | 0.81[AFR][1000 genomes] |
| rs6010655 | 0.84[AFR][1000 genomes] |
| rs6010656 | 0.84[AFR][1000 genomes] |
| rs6010662 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6010663 | 0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6010665 | 0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6011121 | 0.83[AFR][1000 genomes] |
| rs6011135 | 0.86[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6011153 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs61653788 | 0.89[EUR][1000 genomes] |
| rs73323366 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73323382 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73325349 | 0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014