SNP Report
Basic Infomation
| Name | rs6011174 dbSNP |
|---|---|
| Location | chr:20,62463347 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1887407 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4578911 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4809366 | 0.80[AFR][1000 genomes] |
| rs60022917 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6010663 | 0.86[AFR][1000 genomes] |
| rs6010665 | 0.86[AFR][1000 genomes] |
| rs6010674 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6011153 | 1.00[ASN][1000 genomes] |
| rs6011163 | 0.80[AFR][1000 genomes] |
| rs6011164 | 0.80[AFR][1000 genomes] |
| rs6011175 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs6011176 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6011178 | 0.89[AFR][1000 genomes] |
| rs61653788 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67563752 | 0.83[AFR][1000 genomes] |
| rs67675495 | 0.83[AFR][1000 genomes] |
| rs7270958 | 1.00[ASN][1000 genomes] |
| rs73323382 | 0.80[AFR][1000 genomes] |
| rs73325349 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7344617 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZBTB46 | Proximal transcriptional regulation |
| ARFRP1 | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ENSG00000269223 | Distal transcriptional regulation |
| ABHD16B | Distal transcriptional regulation |
| ENSG00000268858 | Distal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014