SNP Report
Basic Infomation
| Name | rs580933 dbSNP |
|---|---|
| Location | chr:11,65196884 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11602839 | 1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11605125 | 1.00[CEU][hapmap] |
| rs1194758 | 0.87[CEU][hapmap] |
| rs1784102 | 0.86[YRI][hapmap] |
| rs1787666 | 0.87[CEU][hapmap] |
| rs2073801 | 0.85[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes] |
| rs2904976 | 0.85[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes] |
| rs475967 | 0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs481335 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs508286 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs512715 | 0.81[JPT][hapmap] |
| rs550015 | 0.85[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs550894 | 0.91[EUR][1000 genomes] |
| rs61154080 | 0.89[EUR][1000 genomes] |
| rs613316 | 0.81[JPT][hapmap] |
| rs616599 | 0.87[CEU][hapmap] |
| rs666834 | 0.85[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs673753 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs674485 | 0.81[JPT][hapmap] |
| rs686320 | 0.85[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KDM3A | Distal transcriptional regulation |
| E2F3 | Distal transcriptional regulation |
| SUPT3H | Distal transcriptional regulation |
| RNU5E-1 | Distal transcriptional regulation |
| ENSG00000270103 | Distal transcriptional regulation |
| RNU5B-1 | Distal transcriptional regulation |
| HIST1H2BK | Distal transcriptional regulation |
| HIST1H2AH | Distal transcriptional regulation |
| MIR3143 | Distal transcriptional regulation |
| RNU4-2 | Distal transcriptional regulation |
| ENSG00000266937 | Distal transcriptional regulation |
| ENSG00000223247 | Distal transcriptional regulation |
| SNHG1 | Distal transcriptional regulation |
| SNORD30 | Distal transcriptional regulation |
| SNORD29 | Distal transcriptional regulation |
| ENSG00000252140 | Distal transcriptional regulation |
| SNORD28 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| HIST1H2BC | Distal transcriptional regulation |
| HIST1H2AC | Distal transcriptional regulation |
| ETF1 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| ENSG00000173727 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| SCYL1 | Distal transcriptional regulation |
| FIBP | Distal transcriptional regulation |
| GNG13 | Distal transcriptional regulation |
| TBL1XR1 | Distal transcriptional regulation |
| CXXC5 | Distal transcriptional regulation |
| ENSG00000250635 | Distal transcriptional regulation |
| ERCC1 | Distal transcriptional regulation |
| ENSG00000229848 | Distal transcriptional regulation |
| ACTG1 | Distal transcriptional regulation |
| USP32 | Distal transcriptional regulation |
| C17orf64 | Distal transcriptional regulation |
| FAM89B | Distal transcriptional regulation |
| EHBP1L1 | Distal transcriptional regulation |
| RELA | Distal transcriptional regulation |
| SIPA1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014