SNP Report
Basic Infomation
| Name | rs11605125 dbSNP |
|---|---|
| Location | chr:11,65211019 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11602839 | 1.00[CEU][hapmap] |
| rs1194758 | 0.87[CEU][hapmap] |
| rs1787666 | 0.87[CEU][hapmap] |
| rs2073801 | 0.85[CEU][hapmap] |
| rs2904976 | 0.85[CEU][hapmap] |
| rs550015 | 0.85[CEU][hapmap] |
| rs580933 | 1.00[CEU][hapmap] |
| rs616599 | 0.87[CEU][hapmap] |
| rs666834 | 0.85[CEU][hapmap] |
| rs673753 | 1.00[CEU][hapmap] |
| rs686320 | 0.85[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MIR612 | Proximal transcriptional regulation |
| BDP1 | Distal transcriptional regulation |
| ENSG00000173727 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| RNU1-5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014