SNP Report
Basic Infomation
| Name | rs2073801 dbSNP |
|---|---|
| Location | chr:11,65168281 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11602839 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11605125 | 0.85[CEU][hapmap] |
| rs2904976 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3741384 | 1.00[CHB][hapmap] |
| rs475967 | 0.88[EUR][1000 genomes] |
| rs481335 | 0.88[EUR][1000 genomes] |
| rs508286 | 0.85[EUR][1000 genomes] |
| rs550015 | 1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs550894 | 0.82[EUR][1000 genomes] |
| rs573864 | 0.90[CHB][hapmap] |
| rs580933 | 0.85[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes] |
| rs61154080 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs666834 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs673753 | 0.85[CEU][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs680413 | 1.00[CHB][hapmap] |
| rs7925823 | 0.91[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MALAT1 | Distal transcriptional regulation |
| FRMD8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014