SNP Report

Basic Infomation

Name	rs680413 dbSNP
Location	chr:11,65190379
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11602839	1.00[CHB][hapmap]
rs1205739	1.00[EUR][1000 genomes]
rs2073801	1.00[CHB][hapmap]
rs2239895	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2904976	1.00[CHB][hapmap];0.80[CHD][hapmap]
rs3741384	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs573864	0.90[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs666834	1.00[CHB][hapmap];0.80[CHD][hapmap];0.80[ASN][1000 genomes]
rs7925823	0.91[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000202077	Distal transcriptional regulation
ADH5	Distal transcriptional regulation
ENSG00000246090	Distal transcriptional regulation
SNHG5	Distal transcriptional regulation
ENSG00000228393	Distal transcriptional regulation
THRAP3	Distal transcriptional regulation
CC2D1B	Distal transcriptional regulation
MCL1	Distal transcriptional regulation
RPS27	Distal transcriptional regulation
TOR1AIP2	Distal transcriptional regulation
ADIPOR1	Distal transcriptional regulation
KLF6	Distal transcriptional regulation
COMMD3	Distal transcriptional regulation
ENSG00000269897	Distal transcriptional regulation
VPS26A	Distal transcriptional regulation
PPA1	Distal transcriptional regulation
TM9SF3	Distal transcriptional regulation
ZFYVE27	Distal transcriptional regulation
SLC25A28	Distal transcriptional regulation
ENSG00000260475	Distal transcriptional regulation
TUBA1B	Distal transcriptional regulation
ENSG00000258017	Distal transcriptional regulation
IFT81	Distal transcriptional regulation
NR4A1	Distal transcriptional regulation
DNAJC3-AS1	Distal transcriptional regulation
DNAJC3	Distal transcriptional regulation
ENSG00000203546	Distal transcriptional regulation
DTD2	Distal transcriptional regulation
PNP	Distal transcriptional regulation
EIF5	Distal transcriptional regulation
GABPB1	Distal transcriptional regulation
GABPB1-AS1	Distal transcriptional regulation
ULK3	Distal transcriptional regulation
H3F3B	Distal transcriptional regulation
STRADA	Distal transcriptional regulation
RECQL5	Distal transcriptional regulation
SAP30BP	Distal transcriptional regulation
INCA1	Distal transcriptional regulation
KIF1C	Distal transcriptional regulation
MNT	Distal transcriptional regulation
AFG3L2	Distal transcriptional regulation
RNF138	Distal transcriptional regulation
ENSG00000268366	Distal transcriptional regulation
CALR	Distal transcriptional regulation
JUND	Distal transcriptional regulation
SNRPA	Distal transcriptional regulation
C19orf54	Distal transcriptional regulation
RAD23A	Distal transcriptional regulation
DUSP28	Distal transcriptional regulation
ANKMY1	Distal transcriptional regulation
TRABD2A	Distal transcriptional regulation
DENND6A	Distal transcriptional regulation
ENSG00000241933	Distal transcriptional regulation
USP53	Distal transcriptional regulation
ENSG00000178636	Distal transcriptional regulation
CCDC127	Distal transcriptional regulation
SDHA	Distal transcriptional regulation
HNRNPAB	Distal transcriptional regulation
ENSG00000261360	Distal transcriptional regulation
FAM105B	Distal transcriptional regulation
FER	Distal transcriptional regulation
HIST1H3G	Distal transcriptional regulation
RPA3	Distal transcriptional regulation
ENSG00000219545	Distal transcriptional regulation
PTGES	Distal transcriptional regulation
SNX12	Distal transcriptional regulation
ENSG00000254474	Distal transcriptional regulation
MIR210HG	Distal transcriptional regulation
SLC25A45	Distal transcriptional regulation
ACER3	Distal transcriptional regulation
THAP7	Distal transcriptional regulation
THAP7-AS1	Distal transcriptional regulation
ZBTB34	Distal transcriptional regulation
HIST1H3B	Distal transcriptional regulation
MIR17HG	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
ENSG00000260233	Distal transcriptional regulation
SSSCA1	Distal transcriptional regulation
FAM89B	Distal transcriptional regulation
EHBP1L1	Distal transcriptional regulation
EIF1AD	Distal transcriptional regulation
BANF1	Distal transcriptional regulation
LTBP3	Distal transcriptional regulation
MIR92A1	Distal transcriptional regulation
HIST1H3D	Distal transcriptional regulation
HIST1H2AD	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
CDC42EP2	Distal transcriptional regulation
ENSG00000173727	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation
SCYL1	Distal transcriptional regulation
MAP3K11	Distal transcriptional regulation
PCNXL3	Distal transcriptional regulation
FOSL1	Distal transcriptional regulation
CFL1	Distal transcriptional regulation
MUS81	Distal transcriptional regulation
DIMT1	Distal transcriptional regulation
IPO11	Distal transcriptional regulation
PLCG1	Distal transcriptional regulation
THOC7-AS1	Distal transcriptional regulation
IGF1R	Distal transcriptional regulation
ENSG00000267280	Distal transcriptional regulation
TBX2	Distal transcriptional regulation
ENSG00000267131	Distal transcriptional regulation
MIR5684	Distal transcriptional regulation
BAG6	Distal transcriptional regulation
APOM	Distal transcriptional regulation
SYVN1	Distal transcriptional regulation
PELI3	Distal transcriptional regulation
RNU1-1	Distal transcriptional regulation
ENSG00000233396	Distal transcriptional regulation
ENSG00000201558	Distal transcriptional regulation
ACBD5	Distal transcriptional regulation
ENSG00000262412	Distal transcriptional regulation
PDLIM1	Distal transcriptional regulation
HSPB1	Distal transcriptional regulation
IRF2BPL	Distal transcriptional regulation
ZNF217	Distal transcriptional regulation
CTBP1	Distal transcriptional regulation
CTBP1-AS1	Distal transcriptional regulation
PUS1	Distal transcriptional regulation
ENSG00000255992	Distal transcriptional regulation
WDR74	Distal transcriptional regulation
PLCB3	Distal transcriptional regulation
CST6	Distal transcriptional regulation
ENSG00000258101	Distal transcriptional regulation
TUBA1C	Distal transcriptional regulation
SLC9A8	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)