SNP Report
Basic Infomation
| Name | rs3741384 dbSNP |
|---|---|
| Location | chr:11,65211505 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11602839 | 1.00[CHB][hapmap] |
| rs1205739 | 0.84[EUR][1000 genomes] |
| rs2073801 | 1.00[CHB][hapmap] |
| rs2239895 | 1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2307264 | 1.00[AFR][1000 genomes] |
| rs2904976 | 1.00[CHB][hapmap];0.80[CHD][hapmap] |
| rs34412377 | 1.00[AFR][1000 genomes] |
| rs34789990 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs35111506 | 1.00[AFR][1000 genomes] |
| rs36009527 | 1.00[AFR][1000 genomes] |
| rs36085849 | 1.00[AFR][1000 genomes] |
| rs573864 | 0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes] |
| rs666834 | 1.00[CHB][hapmap];0.80[CHD][hapmap] |
| rs680413 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7925823 | 0.91[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MIR612 | Proximal transcriptional regulation |
| ENSG00000173727 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| RNU1-5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014