SNP Report
Basic Infomation
| Name | rs34789990 dbSNP |
|---|---|
| Location | chr:11,65252477 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11545200 | 0.80[EUR][1000 genomes] |
| rs11600543 | 0.92[EUR][1000 genomes] |
| rs11602375 | 0.92[EUR][1000 genomes] |
| rs11604369 | 0.96[EUR][1000 genomes] |
| rs11605810 | 0.88[EUR][1000 genomes] |
| rs11605937 | 0.80[EUR][1000 genomes] |
| rs1194337 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12286951 | 0.80[AMR][1000 genomes] |
| rs12799784 | 0.81[EUR][1000 genomes] |
| rs2239895 | 1.00[AFR][1000 genomes] |
| rs2307264 | 1.00[AFR][1000 genomes] |
| rs34412377 | 1.00[AFR][1000 genomes] |
| rs35111506 | 1.00[AFR][1000 genomes] |
| rs35138901 | 0.96[EUR][1000 genomes] |
| rs36009527 | 1.00[AFR][1000 genomes] |
| rs36085849 | 1.00[AFR][1000 genomes] |
| rs3741384 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs3782089 | 0.80[EUR][1000 genomes] |
| rs71462347 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NEAT1 | Distal transcriptional regulation |
| MIR612 | Distal transcriptional regulation |
| EHBP1L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014