SNP Report
Basic Infomation
| Name | rs11605937 dbSNP |
|---|---|
| Location | chr:11,65318123 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11545200 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11600543 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11602375 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11604369 | 0.84[EUR][1000 genomes] |
| rs11605810 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1194337 | 0.82[EUR][1000 genomes] |
| rs12799784 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34789990 | 0.80[EUR][1000 genomes] |
| rs35111506 | 0.88[EUR][1000 genomes] |
| rs35138901 | 0.84[EUR][1000 genomes] |
| rs3782089 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71462347 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7935877 | 0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LTBP3 | Proximal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| CFL1 | Distal transcriptional regulation |
| MUS81 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| SIPA1 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| LTBP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014