SNP Report
Basic Infomation
| Name | rs3782089 dbSNP |
|---|---|
| Location | chr:11,65336819 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10896018 | 1.00[YRI][hapmap] |
| rs11545200 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11600543 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11602375 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11604369 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11605810 | 0.92[EUR][1000 genomes] |
| rs11605937 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1194337 | 0.82[EUR][1000 genomes] |
| rs12799784 | 0.94[EUR][1000 genomes] |
| rs34789990 | 0.80[EUR][1000 genomes] |
| rs35111506 | 0.88[EUR][1000 genomes] |
| rs35138901 | 0.84[EUR][1000 genomes] |
| rs4601790 | 0.82[ASW][hapmap];1.00[YRI][hapmap] |
| rs71462347 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7935877 | 0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SSSCA1 | Proximal transcriptional regulation |
| FAM89B | Proximal transcriptional regulation |
| SLC25A45 | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| CFL1 | Distal transcriptional regulation |
| MUS81 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| FIBP | Distal transcriptional regulation |
| CCDC85B | Distal transcriptional regulation |
| RELA | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| RNASEH2C | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014