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rVarBase
SNP Report
Basic Infomation
Name
rs4601790  
dbSNP
Location
chr:11,65353906
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10896018
0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12419237
0.85[ASN][1000 genomes]
rs3782089
0.82[ASW][hapmap];1.00[YRI][hapmap]
rs749112
0.90[CEU][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
EHBP1L1
Proximal transcriptional regulation
ENSG00000269018
Distal transcriptional regulation
KCNK7
Distal transcriptional regulation
MAP3K11
Distal transcriptional regulation
EHBP1L1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
eQTL related gene
Source
SUMO1
SCAN
SNORD25
SCAN
SNX32
SCAN
DRAP1
SCAN
TPCN2
SCAN
PLA2G16
SCAN
BAD
SCAN
EFCAB4B
SCAN