SNP Report
Basic Infomation
| Name | rs550015 dbSNP |
|---|---|
| Location | chr:11,65186348 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11602839 | 1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs11605125 | 0.85[CEU][hapmap] |
| rs2073801 | 1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2904976 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs475967 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs481335 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs508286 | 0.85[EUR][1000 genomes] |
| rs550894 | 0.82[EUR][1000 genomes] |
| rs580933 | 0.85[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs61154080 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs666834 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs673753 | 0.85[CEU][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7940559 | 0.87[LWK][hapmap];0.88[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NEAT1 | Proximal transcriptional regulation |
| MTR | Distal transcriptional regulation |
| TBX3 | Distal transcriptional regulation |
| SLC16A3 | Distal transcriptional regulation |
| ZNF236 | Distal transcriptional regulation |
| TIMM50 | Distal transcriptional regulation |
| SQSTM1 | Distal transcriptional regulation |
| RAD1 | Distal transcriptional regulation |
| BRIX1 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| FAM89B | Distal transcriptional regulation |
| EHBP1L1 | Distal transcriptional regulation |
| ENSG00000230188 | Distal transcriptional regulation |
| ENSG00000173727 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| SCYL1 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| DPF2 | Distal transcriptional regulation |
| ALPP | Distal transcriptional regulation |
| KDM2A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014