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rVarBase
SNP Report
Basic Infomation
Name
rs7940559  
dbSNP
Location
chr:11,65164114
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs550015
0.87[LWK][hapmap];0.88[YRI][hapmap]
rs666834
0.85[LWK][hapmap];0.88[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
MALAT1
Distal transcriptional regulation
FRMD8
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
eQTL related gene
Source
FAM89B
SCAN
SDHAF2
SCAN
ESRRA
SCAN
TPCN2
SCAN
CHRM1
SCAN
SLC22A24
SCAN
HRASLS2
SCAN