SNP Report

Basic Infomation

Name	rs613316 dbSNP
Location	chr:11,65195255
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 6)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs512715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs580933	0.81[JPT][hapmap]
rs595366	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs673753	0.81[JPT][hapmap]
rs674485	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs694243	0.80[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RNU5E-6P	Distal transcriptional regulation
RNF19B	Distal transcriptional regulation
STXBP3	Distal transcriptional regulation
AHCTF1	Distal transcriptional regulation
IL15RA	Distal transcriptional regulation
KAZALD1	Distal transcriptional regulation
ING1	Distal transcriptional regulation
TINF2	Distal transcriptional regulation
FOS	Distal transcriptional regulation
HDDC3	Distal transcriptional regulation
DDX5	Distal transcriptional regulation
CALM2	Distal transcriptional regulation
RPL37	Distal transcriptional regulation
PTGER4	Distal transcriptional regulation
KDM6A	Distal transcriptional regulation
EIF4G2	Distal transcriptional regulation
RNU5E-1	Distal transcriptional regulation
FHL3	Distal transcriptional regulation
YBX1	Distal transcriptional regulation
RNU1-5	Distal transcriptional regulation
ENSG00000259788	Distal transcriptional regulation
UAP1	Distal transcriptional regulation
HIST1H3A	Distal transcriptional regulation
HNRNPA2B1	Distal transcriptional regulation
CBX3	Distal transcriptional regulation
RNU5B-1	Distal transcriptional regulation
HIST1H2BK	Distal transcriptional regulation
HIST1H2AH	Distal transcriptional regulation
MIR3143	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
LTBP3	Distal transcriptional regulation
MAP3K11	Distal transcriptional regulation
PCNXL3	Distal transcriptional regulation
ENSG00000260233	Distal transcriptional regulation
SSSCA1	Distal transcriptional regulation
SNORA73A	Distal transcriptional regulation
SNORA73B	Distal transcriptional regulation
HIST1H2BG	Distal transcriptional regulation
HIST1H2AE	Distal transcriptional regulation
ENSG00000267598	Distal transcriptional regulation
VAC14	Distal transcriptional regulation
FSCN1	Distal transcriptional regulation
HIST1H2BC	Distal transcriptional regulation
HIST1H2AC	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
ENSG00000173727	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation
SCYL1	Distal transcriptional regulation
H2AFX	Distal transcriptional regulation
CCNB1	Distal transcriptional regulation
YWHAZ	Distal transcriptional regulation
GNG13	Distal transcriptional regulation
TBL1XR1	Distal transcriptional regulation
ENSG00000266937	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation
ENSG00000254501	Distal transcriptional regulation
TM7SF2	Distal transcriptional regulation
EHBP1L1	Distal transcriptional regulation
ENSG00000257453	Distal transcriptional regulation
PHLDA1	Distal transcriptional regulation
HINT1	Distal transcriptional regulation
CXXC5	Distal transcriptional regulation
ENSG00000250635	Distal transcriptional regulation
ACTG1	Distal transcriptional regulation
ENSG00000229947	Distal transcriptional regulation
ENSG00000229848	Distal transcriptional regulation
ENSG00000255173	Distal transcriptional regulation
CDC42EP2	Distal transcriptional regulation
FAM89B	Distal transcriptional regulation
RELA	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)