SNP Report
Basic Infomation
| Name | rs694243 dbSNP |
|---|---|
| Location | chr:11,65172197 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1621277 | 0.83[MEX][hapmap] |
| rs1626021 | 0.83[MEX][hapmap] |
| rs1784859 | 0.83[MEX][hapmap] |
| rs2846861 | 0.83[MEX][hapmap] |
| rs2904975 | 0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs512715 | 0.83[ASW][hapmap];0.95[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.80[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs588298 | 0.83[MEX][hapmap] |
| rs595366 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs613316 | 0.80[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs674485 | 0.88[ASW][hapmap];0.95[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.80[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| FRMD8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014