SNP Report
Basic Infomation
| Name | rs512715 dbSNP |
|---|---|
| Location | chr:11,65191208 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1621277 | 0.83[MEX][hapmap] |
| rs1626021 | 0.83[MEX][hapmap] |
| rs1784859 | 0.83[MEX][hapmap] |
| rs2846861 | 0.83[MEX][hapmap] |
| rs2904975 | 0.80[AMR][1000 genomes] |
| rs580933 | 0.81[JPT][hapmap] |
| rs588298 | 0.83[MEX][hapmap] |
| rs595366 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs613316 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs673753 | 0.81[JPT][hapmap] |
| rs674485 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs694243 | 0.83[ASW][hapmap];0.95[CEU][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.80[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| H1FX | Distal transcriptional regulation |
| CEP70 | Distal transcriptional regulation |
| PPP3CA | Distal transcriptional regulation |
| ENSG00000254531 | Distal transcriptional regulation |
| ERRFI1 | Distal transcriptional regulation |
| RPS8 | Distal transcriptional regulation |
| H3F3A | Distal transcriptional regulation |
| METTL20 | Distal transcriptional regulation |
| LINC00338 | Distal transcriptional regulation |
| SEC14L1 | Distal transcriptional regulation |
| ENSG00000188825 | Distal transcriptional regulation |
| RAD23A | Distal transcriptional regulation |
| TP53I3 | Distal transcriptional regulation |
| ENSG00000222724 | Distal transcriptional regulation |
| UBE2D4 | Distal transcriptional regulation |
| PHF20L1 | Distal transcriptional regulation |
| SETX | Distal transcriptional regulation |
| KDM6A | Distal transcriptional regulation |
| EIF4G2 | Distal transcriptional regulation |
| ZBTB34 | Distal transcriptional regulation |
| HIST1H3B | Distal transcriptional regulation |
| MIR17HG | Distal transcriptional regulation |
| C21orf58 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| FAM89B | Distal transcriptional regulation |
| EHBP1L1 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| MIR92A1 | Distal transcriptional regulation |
| HIST1H3D | Distal transcriptional regulation |
| HIST1H2AD | Distal transcriptional regulation |
| ENSG00000228393 | Distal transcriptional regulation |
| MLL5 | Distal transcriptional regulation |
| ENSG00000265131 | Distal transcriptional regulation |
| CD68 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000173727 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| SCYL1 | Distal transcriptional regulation |
| FOSL1 | Distal transcriptional regulation |
| CFL1 | Distal transcriptional regulation |
| MUS81 | Distal transcriptional regulation |
| KAT5 | Distal transcriptional regulation |
| PLCG1 | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| IGF1R | Distal transcriptional regulation |
| ENSG00000267280 | Distal transcriptional regulation |
| TBX2 | Distal transcriptional regulation |
| ENSG00000267131 | Distal transcriptional regulation |
| MIR5684 | Distal transcriptional regulation |
| BAG6 | Distal transcriptional regulation |
| APOM | Distal transcriptional regulation |
| SERINC4 | Distal transcriptional regulation |
| OSBPL7 | Distal transcriptional regulation |
| PELI3 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| ENSG00000269018 | Distal transcriptional regulation |
| KCNK7 | Distal transcriptional regulation |
| RNU1-1 | Distal transcriptional regulation |
| ACBD5 | Distal transcriptional regulation |
| ENSG00000262412 | Distal transcriptional regulation |
| PDLIM1 | Distal transcriptional regulation |
| PUS1 | Distal transcriptional regulation |
| ENSG00000255992 | Distal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| CST6 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014