SNP Report

Basic Infomation

Name	rs595366 dbSNP
Location	chr:11,65196931
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 5)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2904975	0.81[AMR][1000 genomes]
rs512715	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs613316	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs674485	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs694243	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
KDM3A	Distal transcriptional regulation
E2F3	Distal transcriptional regulation
SUPT3H	Distal transcriptional regulation
RNU5E-1	Distal transcriptional regulation
ENSG00000270103	Distal transcriptional regulation
RNU5B-1	Distal transcriptional regulation
HIST1H2BK	Distal transcriptional regulation
HIST1H2AH	Distal transcriptional regulation
MIR3143	Distal transcriptional regulation
RNU4-2	Distal transcriptional regulation
ENSG00000266937	Distal transcriptional regulation
ENSG00000223247	Distal transcriptional regulation
SNHG1	Distal transcriptional regulation
SNORD30	Distal transcriptional regulation
SNORD29	Distal transcriptional regulation
ENSG00000252140	Distal transcriptional regulation
SNORD28	Distal transcriptional regulation
SPDYC	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
ENSG00000260233	Distal transcriptional regulation
SSSCA1	Distal transcriptional regulation
LTBP3	Distal transcriptional regulation
HIST1H2BC	Distal transcriptional regulation
HIST1H2AC	Distal transcriptional regulation
ETF1	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
ENSG00000173727	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation
SCYL1	Distal transcriptional regulation
FIBP	Distal transcriptional regulation
GNG13	Distal transcriptional regulation
TBL1XR1	Distal transcriptional regulation
CXXC5	Distal transcriptional regulation
ENSG00000250635	Distal transcriptional regulation
ERCC1	Distal transcriptional regulation
ENSG00000229848	Distal transcriptional regulation
ACTG1	Distal transcriptional regulation
USP32	Distal transcriptional regulation
C17orf64	Distal transcriptional regulation
FAM89B	Distal transcriptional regulation
EHBP1L1	Distal transcriptional regulation
RELA	Distal transcriptional regulation
SIPA1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)