SNP Report
Basic Infomation
| Name | rs542998 dbSNP |
|---|---|
| Location | chr:11,63487386 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897442 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231545 | 0.82[YRI][hapmap] |
| rs1186605 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1186941 | 0.85[MEX][hapmap] |
| rs1404500 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs17615385 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1789218 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2509744 | 0.85[MEX][hapmap] |
| rs2850617 | 0.83[AFR][1000 genomes] |
| rs2959872 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2959880 | 0.85[MEX][hapmap] |
| rs3016865 | 0.85[MEX][hapmap] |
| rs3758647 | 1.00[CHB][hapmap] |
| rs41509648 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs474548 | 0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs500991 | 0.85[MEX][hapmap] |
| rs517700 | 0.85[MEX][hapmap] |
| rs520908 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs523093 | 0.85[MEX][hapmap] |
| rs542966 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs545539 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs566255 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs567756 | 0.85[MEX][hapmap] |
| rs580695 | 0.85[MEX][hapmap] |
| rs61928249 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7111395 | 0.85[MEX][hapmap] |
| rs7122132 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7128970 | 0.85[MEX][hapmap] |
| rs7943981 | 0.85[MEX][hapmap] |
| rs7945972 | 0.85[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ATL3 | Distal transcriptional regulation |
| RTN3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014