SNP Report

Basic Infomation

Name	rs2509744 dbSNP
Location	chr:11,63537509
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 98)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10501394	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231543	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231545	1.00[CEU][hapmap]
rs11551942	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551944	0.91[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820129	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1186941	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274980	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158453	1.00[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656941	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1789218	0.93[YRI][hapmap]
rs1789219	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959876	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959880	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959881	0.84[EUR][1000 genomes]
rs2959886	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3016865	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34109368	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35345497	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474548	0.85[MEX][hapmap]
rs476034	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476691	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482915	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491231	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500726	0.98[EUR][1000 genomes]
rs500991	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511819	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517700	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518490	1.00[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518692	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521464	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523093	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534505	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534876	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539306	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541809	0.92[EUR][1000 genomes]
rs542998	0.85[MEX][hapmap]
rs550629	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551466	1.00[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559405	0.94[EUR][1000 genomes]
rs560938	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562549	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566255	0.85[MEX][hapmap]
rs567756	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568769	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs568790	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580695	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588523	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928162	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928163	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928165	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928166	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928167	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928168	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928195	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928196	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928197	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928202	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928203	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928204	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928205	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928206	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928208	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928209	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928211	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928212	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928236	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928237	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928238	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928239	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928241	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928243	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928244	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928245	0.93[EUR][1000 genomes]
rs61928246	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928247	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928248	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929731	0.81[EUR][1000 genomes]
rs6591821	0.95[EUR][1000 genomes]
rs6591822	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111395	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117206	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127454	1.00[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128970	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928900	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931908	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932117	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939940	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943981	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944003	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944094	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945972	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949389	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949447	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
C11orf95	Proximal transcriptional regulation
ENSG00000255651	Proximal transcriptional regulation
C11orf84	Distal transcriptional regulation
ENSG00000202089	Distal transcriptional regulation
COX8A	Distal transcriptional regulation
ENSG00000256100	Distal transcriptional regulation
MARK2	Distal transcriptional regulation
C11orf95	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
HRASLS3	Pritchard
SLC22A9	SCAN
FLRT1	SCAN
MTA2	SCAN
PLA2G16	SCAN
SNORD25	SCAN
RASGRP2	SCAN