SNP Report
Basic Infomation
| Name | rs7127454 dbSNP |
|---|---|
| Location | chr:11,63483191 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 94)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10501394 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231543 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231545 | 1.00[CEU][hapmap] |
| rs11551942 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11551944 | 0.91[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11820129 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1186941 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12274980 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17158453 | 1.00[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17656941 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17657473 | 1.00[CEU][hapmap] |
| rs1789219 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2509744 | 1.00[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2959876 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2959880 | 1.00[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2959886 | 0.92[EUR][1000 genomes] |
| rs3016865 | 1.00[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34109368 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35345497 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs476034 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs476691 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs482915 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs491231 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs500726 | 0.93[EUR][1000 genomes] |
| rs500991 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs511819 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs517700 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs518490 | 1.00[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs518692 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs521464 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs523093 | 1.00[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs534505 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs534876 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs539306 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs541809 | 0.88[EUR][1000 genomes] |
| rs550629 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs551466 | 1.00[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs559405 | 0.90[EUR][1000 genomes] |
| rs560938 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs562549 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs567756 | 1.00[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs568769 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs568790 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs580695 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs588523 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928162 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928163 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928165 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928166 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928167 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928168 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928195 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928196 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928197 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928202 | 0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928203 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928204 | 0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928205 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928206 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928208 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928209 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928211 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928212 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928214 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928234 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928236 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928237 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928238 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928239 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928241 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928243 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928244 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928245 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs61928246 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928247 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61928248 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61929731 | 0.81[EUR][1000 genomes] |
| rs6591821 | 0.95[EUR][1000 genomes] |
| rs6591822 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7106670 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7111395 | 1.00[CEU][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7117206 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7119961 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7128970 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7928900 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7931908 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7932117 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7939940 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7943981 | 1.00[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7944003 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7944094 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7945972 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7949389 | 0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7949447 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RTN3 | Distal transcriptional regulation |
| RTN3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| NGFRAP1 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014