SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11231545	0.83[YRI][hapmap]
rs1186605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404500	1.00[JPT][hapmap]
rs17615385	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1789218	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2959872	1.00[ASN][1000 genomes]
rs3758647	1.00[CHB][hapmap]
rs41509648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs474548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs542966	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs542998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545539	1.00[ASN][1000 genomes]
rs566255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928249	1.00[ASN][1000 genomes]
rs7122132	1.00[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
RTN3	Distal transcriptional regulation
ATL3	Distal transcriptional regulation
RTN3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)