SNP Report
Basic Infomation
| Name | rs520908 dbSNP |
|---|---|
| Location | chr:11,63453176 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897442 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1186605 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1404500 | 0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs17615385 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1789218 | 1.00[CHB][hapmap] |
| rs3758647 | 1.00[CHB][hapmap] |
| rs41509648 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap] |
| rs474548 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs542966 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs542998 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs558768 | 0.84[AFR][1000 genomes] |
| rs566255 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs684865 | 0.82[ASW][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs7109362 | 0.82[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs7113534 | 0.81[AMR][1000 genomes] |
| rs7118001 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7122132 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RTN3 | Distal transcriptional regulation |
| RTN3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014