SNP Report
Basic Infomation
| Name | rs41509648 dbSNP |
|---|---|
| Location | chr:11,63579982 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897442 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11231674 | 1.00[CHB][hapmap] |
| rs11551215 | 0.89[EUR][1000 genomes] |
| rs1186605 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12291587 | 1.00[EUR][1000 genomes] |
| rs12361815 | 1.00[CHB][hapmap] |
| rs1404500 | 1.00[JPT][hapmap];0.89[TSI][hapmap] |
| rs17615385 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1789218 | 1.00[CHB][hapmap] |
| rs2508191 | 1.00[CHB][hapmap] |
| rs3758647 | 1.00[CHB][hapmap] |
| rs474548 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs520908 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap] |
| rs542966 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs542998 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs554164 | 1.00[ASN][1000 genomes] |
| rs566255 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs687631 | 1.00[ASN][1000 genomes] |
| rs7122132 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C11orf84 | Proximal transcriptional regulation |
| C11orf95 | Distal transcriptional regulation |
| ENSG00000255651 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| RTN3 | Distal transcriptional regulation |
| ATL3 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| ZBTB3 | Distal transcriptional regulation |
| C11orf84 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014