SNP Report
Basic Infomation
| Name | rs684865 dbSNP |
|---|---|
| Location | chr:11,63485950 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897460 | 1.00[TSI][hapmap] |
| rs11826418 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12099085 | 1.00[TSI][hapmap] |
| rs12271959 | 1.00[TSI][hapmap] |
| rs2030727 | 1.00[EUR][1000 genomes] |
| rs2030728 | 1.00[EUR][1000 genomes] |
| rs320110 | 1.00[TSI][hapmap] |
| rs492948 | 0.82[AFR][1000 genomes] |
| rs520908 | 0.82[ASW][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs558768 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs592416 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs59485568 | 1.00[EUR][1000 genomes] |
| rs60027303 | 1.00[EUR][1000 genomes] |
| rs615155 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs652233 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs663053 | 1.00[EUR][1000 genomes] |
| rs683904 | 1.00[EUR][1000 genomes] |
| rs7109362 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7123788 | 1.00[TSI][hapmap] |
| rs7948681 | 1.00[TSI][hapmap] |
| rs7952003 | 1.00[TSI][hapmap] |
| rs9804541 | 1.00[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RTN3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014