SNP Report
Basic Infomation
| Name | rs652233 dbSNP |
|---|---|
| Location | chr:11,63379850 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11826418 | 1.00[EUR][1000 genomes] |
| rs2030727 | 0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2030728 | 0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs558768 | 1.00[EUR][1000 genomes] |
| rs590570 | 0.91[AFR][1000 genomes] |
| rs592416 | 0.85[ASW][hapmap];0.81[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59485568 | 1.00[EUR][1000 genomes] |
| rs60027303 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs615155 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs663053 | 1.00[EUR][1000 genomes] |
| rs683904 | 1.00[EUR][1000 genomes] |
| rs684865 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs7109362 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs7935128 | 1.00[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLA2G16 | Proximal transcriptional regulation |
| ENSG00000203520 | Proximal transcriptional regulation |
| PLA2G16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| POLE3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014