SNP Report

Basic Infomation

Name	rs3953093 dbSNP
Location	chr:1,160887751
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10797088	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10797089	0.84[EUR][1000 genomes]
rs10908809	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11265510	0.86[EUR][1000 genomes]
rs11265529	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11585274	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11587040	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12080285	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12740520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1855186	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1855187	0.86[EUR][1000 genomes]
rs2184064	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4656281	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4656282	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4656959	0.87[EUR][1000 genomes]
rs4656960	0.86[EUR][1000 genomes]
rs4656961	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6427554	0.85[EUR][1000 genomes]
rs6427559	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6674437	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6691868	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6694415	0.85[EUR][1000 genomes]
rs6694743	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6700408	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6703062	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6703704	0.86[EUR][1000 genomes]
rs6704490	0.85[EUR][1000 genomes]
rs7516660	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7551697	0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ITLN1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)