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rVarBase
SNP Report
Basic Infomation
Name
rs6694743  
dbSNP
Location
chr:1,160918547
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10797088
0.83[EUR][1000 genomes]
rs11587040
0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12080285
0.87[EUR][1000 genomes]
rs12740520
0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1855186
0.83[EUR][1000 genomes]
rs2184064
0.83[EUR][1000 genomes]
rs3953093
0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4656282
0.81[AMR][1000 genomes]
rs6427559
0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6674437
0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6703062
0.83[EUR][1000 genomes]
rs7516660
0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000198358
RNA binding protein mediated regulation
ITLN2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)